miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27036	+	12987	89	22.5	-30.8	YP_003781		5' arm      3' arm
27037	+	13230	87	22.5	-21.6	YP_003781		5' arm      3' arm
27038	+	14116	90	20	-21.2	YP_003783		5' arm      3' arm
27039	+	15051	90	21	-22.6	YP_003784		5' arm      3' arm
27040	+	15599	87	19	-24.5	YP_003784		5' arm      3' arm
27041	+	15793	89	19	-26.4	YP_003784		5' arm      3' arm
27042	+	16843	88	19	-23.4	YP_003785		5' arm      3' arm
27043	+	17200	90	27	-22.4	YP_003785		5' arm      3' arm
27044	+	17814	90	23	-20.2	YP_003786		5' arm      3' arm
27045	+	17962	90	23	-26.3	YP_003786		5' arm      3' arm
27046	+	20801	85	19.5	-24.9	YP_003788		5' arm      3' arm
27047	+	21401	90	21	-23.6			5' arm      3' arm
27048	+	23747	89	21	-26.2	YP_003791		5' arm      3' arm
27049	+	26460	87	20	-30.2	YP_003794		5' arm      3' arm
27050	+	27344	87	19	-27.8	YP_003796		5' arm      3' arm
27051	+	27546	84	21.5	-31.5	YP_003796		5' arm      3' arm
27052	+	29188	90	22.5	-31.1	YP_003797		5' arm      3' arm
27053	+	30247	87	20.5	-20.8	YP_003797		5' arm      3' arm
27054	+	31691	86	20.5	-23.5	YP_003800		5' arm      3' arm
27055	+	32073	89	19.5	-20.8	YP_003801		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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