miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31681	-	23506	90	19.5	-36.2	YP_214256		5' arm      3' arm
31676	+	183790	89	24	-29.1	YP_214463		5' arm      3' arm
31683	-	27561	90	21	-28.9	YP_214260		5' arm      3' arm
31668	+	28068	90	21	-28.9	YP_214260		5' arm      3' arm
31687	-	109875	90	19.5	-27	YP_214357		5' arm      3' arm
31688	-	208965	85	19.5	-26.9	YP_214509		5' arm      3' arm
31680	-	23182	90	28	-26.8	YP_214256		5' arm      3' arm
31662	+	23648	90	23	-26.7	YP_214256		5' arm      3' arm
31661	+	23442	88	21	-26.3	YP_214256		5' arm      3' arm
31677	-	21864	90	22	-25.9	YP_214255		5' arm      3' arm
31664	+	27248	89	19.5	-25.7	YP_214260		5' arm      3' arm
31674	+	146205	85	21	-25.7	YP_214407		5' arm      3' arm
31660	+	23093	89	20	-25.5	YP_214256		5' arm      3' arm
31669	+	28164	90	19	-25.2	YP_214260		5' arm      3' arm
31675	+	181189	89	25.5	-25	YP_214455		5' arm      3' arm
31665	+	27371	86	22	-24.6	YP_214260		5' arm      3' arm
31684	-	27962	90	26	-24.4	YP_214260		5' arm      3' arm
31667	+	27974	89	22.5	-23.5	YP_214260		5' arm      3' arm
31685	-	28060	86	23	-22.4	YP_214260		5' arm      3' arm
31666	+	27873	90	19	-22.2	YP_214260		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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