miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630816 NC_001962.1 Bombyx mori nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7562 + 1529 90 22.5 -19.6 NP_047415 5' arm      3' arm
7563 + 12903 87 20 -21.2 NP_047427 5' arm      3' arm
7564 + 21180 89 22.5 -20.9 NP_047498 5' arm      3' arm
7565 + 24580 89 21 -21.5 NP_047440 5' arm      3' arm
7566 + 60170 89 24 -19.9 NP_047483 5' arm      3' arm
7567 + 81945 90 23 -23.2 NP_047503 5' arm      3' arm
7568 + 100776 89 20.5 -22.7 NP_047525 5' arm      3' arm
7569 + 103055 90 19.5 -26.9 NP_047528 5' arm      3' arm
7570 + 107163 89 21.5 -25.8 5' arm      3' arm
7571 + 120029 87 22.5 -20 NP_047546 5' arm      3' arm
7572 + 126061 86 20.5 -20.8 NP_047553 5' arm      3' arm
7573 - 28994 90 20 -22.1 NP_047446 5' arm      3' arm
7574 - 31941 85 20.5 -23.5 NP_047449 5' arm      3' arm
7575 - 34290 90 21 -26.4 NP_047452 5' arm      3' arm
7576 - 35713 89 21.5 -24.3 NP_047454 5' arm      3' arm
7577 - 64292 90 23.5 -25.9 NP_047486 5' arm      
7578 - 67618 89 23 -21.6 NP_047489 5' arm      3' arm
7579 - 68616 90 19 -24.1 5' arm      3' arm
7580 - 81116 90 20 -24.5 NP_047502       3' arm
7581 - 84570 90 20 -20.5 NP_047505 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.