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| GenBank Identifier | RefSeq Acc. | Name |
| 66476549 | NC_007016.1 | Macaca fuscata rhadinovirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 32225 | - | 123423 | 88 | 20.5 | -28.1 | YP_238465 | 5' arm 3' arm | ||
| 32126 | + | 125976 | 89 | 21.5 | -21.2 | YP_238464 | 5' arm 3' arm | ||
| 32127 | + | 126335 | 88 | 21.5 | -23.9 | YP_238464 | 5' arm 3' arm | ||
| 32123 | + | 124283 | 77 | 20 | -20.8 | YP_238464 | 5' arm 3' arm | ||
| 32124 | + | 125728 | 90 | 23 | -19.8 | YP_238464 | 5' arm 3' arm | ||
| 32226 | - | 124081 | 90 | 21.5 | -24.8 | YP_238464 | 5' arm 3' arm | ||
| 32122 | + | 123577 | 88 | 22.5 | -22.9 | YP_238464 | 5' arm 3' arm | ||
| 32227 | - | 125261 | 87 | 19 | -19.4 | YP_238464 | 5' arm 3' arm | ||
| 32125 | + | 125869 | 87 | 19 | -24.1 | YP_238464 | 5' arm 3' arm | ||
| 32120 | + | 121170 | 90 | 21 | -22.2 | YP_238461 | 5' arm 3' arm | ||
| 32119 | + | 120006 | 82 | 20 | -21.9 | YP_238459 | 5' arm 3' arm | ||
| 32223 | - | 119194 | 88 | 23 | -26 | YP_238456 | 5' arm 3' arm | ||
| 32118 | + | 117529 | 80 | 19.5 | -28.1 | YP_238455 | 5' arm 3' arm | ||
| 32221 | - | 116438 | 88 | 23.5 | -29.9 | YP_238453 | 5' arm 3' arm | ||
| 32222 | - | 116573 | 88 | 20.5 | -24.1 | YP_238453 | 5' arm 3' arm | ||
| 32116 | + | 115931 | 89 | 19 | -21.7 | YP_238452 | 5' arm 3' arm | ||
| 32218 | - | 115990 | 88 | 22.5 | -31.3 | YP_238452 | 5' arm 3' arm | ||
| 32217 | - | 115832 | 90 | 19.5 | -33.3 | YP_238450 | 5' arm 3' arm | ||
| 32216 | - | 115497 | 88 | 20 | -22.4 | YP_238450 | 5' arm 3' arm | ||
| 32114 | + | 114549 | 90 | 20.5 | -22.1 | YP_238449 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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