miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
66476549 NC_007016.1 Macaca fuscata rhadinovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
32158 - 41862 88 19 -29.7 YP_238348 5' arm      3' arm
32187 - 99316 89 25 -29.5 YP_238427 5' arm      3' arm
32149 - 19883 65 23 -29 5' arm      3' arm
32077 + 16877 90 19.5 -28.8 YP_238321 5' arm      3' arm
32074 + 14847 88 20 -28.5 YP_238319 5' arm      3' arm
32209 - 112191 88 26.5 -28.5 5' arm      3' arm
32208 - 112019 89 27.5 -28.3 5' arm      3' arm
32168 - 67261 85 19.5 -28.2 YP_238387 5' arm      3' arm
32225 - 123423 88 20.5 -28.1 YP_238465 5' arm      3' arm
32118 + 117529 80 19.5 -28.1 YP_238455 5' arm      3' arm
32131 - 251 88 20.5 -28 5' arm      3' arm
32089 + 28879 88 20 -27.9 YP_238335 5' arm      3' arm
32086 + 26731 86 19.5 -27.8 YP_238332 5' arm      3' arm
32145 - 17730 89 22.5 -27.6 YP_238323 5' arm      3' arm
32183 - 90636 90 20.5 -27.3 YP_238419 5' arm      3' arm
32099 + 52208 83 20.5 -27.3 YP_238368 5' arm      3' arm
32194 - 103655 89 21.5 -27.3 YP_238427 5' arm      3' arm
32091 + 29746 89 23.5 -27.1 YP_238335 5' arm      3' arm
32184 - 93120 84 21.5 -26.8 YP_238422 5' arm      3' arm
32147 - 19484 89 19.5 -26.6 YP_238324 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.