miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48697190 NC_005887.1 Burkholderia cepacia complex phage BcepC6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28098 + 41000 89 23 -23.3 YP_024966 5' arm      3' arm
28099 + 41102 90 20.5 -24 YP_024966 5' arm      3' arm
28180 - 40823 88 19 -23.5 YP_024966 5' arm      3' arm
28102 + 42166 87 23 -27.1 YP_024966 5' arm      3' arm
28178 - 40544 90 22.5 -26.2 YP_024966 5' arm      3' arm
28101 + 42062 88 21 -21.3 YP_024966 5' arm      3' arm
28100 + 41437 90 21.5 -25.3 YP_024966 5' arm      3' arm
28095 + 39977 89 20 -20.4 YP_024966 5' arm      3' arm
28103 + 42298 90 20.5 -21.4 YP_024966 5' arm      3' arm
28181 - 41108 79 19.5 -19.6 YP_024966 5' arm      3' arm
28179 - 40704 89 21 -19.5 YP_024966 5' arm      3' arm
28096 + 40115 90 23 -23.7 YP_024966 5' arm      3' arm
28097 + 40288 89 20.5 -21.8 YP_024966 5' arm      3' arm
28093 + 39024 89 23 -20.9 YP_024964 5' arm      3' arm
28094 + 39155 89 19.5 -22.8 YP_024964 5' arm      3' arm
28177 - 38895 89 22.5 -19.6 YP_024964 5' arm      3' arm
28092 + 38198 90 20.5 -28.9 YP_024963 5' arm      3' arm
28088 + 36570 88 20 -23.9 YP_024960 5' arm      3' arm
28175 - 36578 89 21 -20.5 YP_024960 5' arm      3' arm
28082 + 35260 88 23.5 -21.7 YP_024959 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.