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| GenBank Identifier | RefSeq Acc. | Name |
| 48697190 | NC_005887.1 | Burkholderia cepacia complex phage BcepC6B |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28059 | + | 28901 | 90 | 20 | -19.4 | YP_024951 | 5' arm 3' arm | ||
| 28179 | - | 40704 | 89 | 21 | -19.5 | YP_024966 | 5' arm 3' arm | ||
| 28048 | + | 26056 | 88 | 20.5 | -19.5 | 5' arm 3' arm | |||
| 28004 | + | 3464 | 81 | 20.5 | -19.5 | YP_024925 | 5' arm 3' arm | ||
| 28177 | - | 38895 | 89 | 22.5 | -19.6 | YP_024964 | 5' arm 3' arm | ||
| 28026 | + | 15399 | 88 | 19 | -19.6 | YP_024936 | 5' arm 3' arm | ||
| 28181 | - | 41108 | 79 | 19.5 | -19.6 | YP_024966 | 5' arm 3' arm | ||
| 28016 | + | 10040 | 86 | 20.5 | -19.8 | YP_024932 | 5' arm 3' arm | ||
| 28080 | + | 34786 | 88 | 20.5 | -19.8 | YP_024958 | 5' arm 3' arm | ||
| 28174 | - | 34690 | 89 | 19 | -19.9 | YP_024958 | 5' arm 3' arm | ||
| 28111 | - | 4877 | 87 | 21 | -20 | YP_024926 | 5' arm 3' arm | ||
| 28041 | + | 22467 | 89 | 23.5 | -20.1 | YP_024941 | 5' arm 3' arm | ||
| 28011 | + | 8609 | 88 | 21.5 | -20.1 | YP_024932 | 5' arm 3' arm | ||
| 28167 | - | 30599 | 88 | 19.5 | -20.1 | YP_024952 | 5' arm 3' arm | ||
| 27996 | + | 225 | 88 | 21 | -20.2 | YP_024921 | 5' arm 3' arm | ||
| 28125 | - | 10064 | 89 | 22 | -20.2 | YP_024932 | 5' arm 3' arm | ||
| 28035 | + | 19700 | 86 | 21 | -20.3 | YP_024938 | 5' arm 3' arm | ||
| 28072 | + | 31857 | 87 | 20.5 | -20.3 | YP_024953 | 5' arm 3' arm | ||
| 28019 | + | 13562 | 90 | 21 | -20.3 | YP_024935 | 5' arm 3' arm | ||
| 28095 | + | 39977 | 89 | 20 | -20.4 | YP_024966 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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