miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48697190 NC_005887.1 Burkholderia cepacia complex phage BcepC6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28178 - 40544 90 22.5 -26.2 YP_024966 5' arm      3' arm
28164 - 29010 85 19 -21.1 YP_024951 5' arm      3' arm
28159 - 26977 85 22 -21.9 YP_024948 5' arm      3' arm
28108 - 3956 88 20.5 -23.8 YP_024925 5' arm      3' arm
28176 - 38096 85 19.5 -21.7 5' arm      3' arm
28180 - 40823 88 19 -23.5 YP_024966 5' arm      3' arm
28172 - 33271 90 20 -24.1 5' arm      3' arm
28173 - 34489 89 19.5 -28 5' arm      3' arm
28166 - 30153 88 23 -24.4 YP_024952 5' arm      3' arm
28167 - 30599 88 19.5 -20.1 YP_024952 5' arm      3' arm
28170 - 31718 88 20.5 -23.3 YP_024953 5' arm      3' arm
28165 - 29345 87 23.5 -23.2 5' arm      3' arm
28177 - 38895 89 22.5 -19.6 YP_024964 5' arm      3' arm
28169 - 31427 88 20.5 -20.8 YP_024952 5' arm      3' arm
28179 - 40704 89 21 -19.5 YP_024966 5' arm      3' arm
28174 - 34690 89 19 -19.9 YP_024958 5' arm      3' arm
28168 - 31338 90 20 -24.9 YP_024952 5' arm      3' arm
28160 - 27389 90 23 -26.6 YP_024948 5' arm      3' arm
28181 - 41108 79 19.5 -19.6 YP_024966 5' arm      3' arm
28175 - 36578 89 21 -20.5 YP_024960 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.