miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48697190 NC_005887.1 Burkholderia cepacia complex phage BcepC6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28001 + 2070 88 21.5 -22.9 YP_024923 5' arm      3' arm
27999 + 1824 88 20 -24.8 YP_024923 5' arm      3' arm
28003 + 2550 90 20 -24.6 YP_024923 5' arm      3' arm
27997 + 1390 86 19.5 -21.9 YP_024923 5' arm      3' arm
28000 + 1937 88 19 -22.1 YP_024923 5' arm      3' arm
28104 - 1711 87 23.5 -26.8 YP_024923 5' arm      3' arm
28106 - 3078 90 23 -28.1 YP_024924 5' arm      3' arm
28109 - 4511 90 21.5 -23.6 YP_024925 5' arm      3' arm
28005 + 3951 85 22 -23.8 YP_024925 5' arm      3' arm
28110 - 4686 89 22 -25.5 YP_024925 5' arm      3' arm
28006 + 4431 89 21.5 -25.5 YP_024925 5' arm      3' arm
28108 - 3956 88 20.5 -23.8 YP_024925 5' arm      3' arm
28007 + 4637 87 20 -20.8 YP_024925 5' arm      3' arm
28004 + 3464 81 20.5 -19.5 YP_024925 5' arm      3' arm
28107 - 3645 90 21.5 -24.7 YP_024925 5' arm      3' arm
28112 - 5117 90 21 -30.2 YP_024926 5' arm      3' arm
28111 - 4877 87 21 -20 YP_024926 5' arm      3' arm
28113 - 5224 90 20.5 -26 YP_024926 5' arm      3' arm
28114 - 5331 90 21.5 -22.6 YP_024926 5' arm      3' arm
28008 + 5881 90 24 -24.5 YP_024927 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.