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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31774 | + | 55068 | 77 | 20 | -26.81 | YP_224009 | 5' arm 3' arm | ||
| 31896 | - | 54091 | 90 | 19 | -22.5 | YP_224008 | 5' arm 3' arm | ||
| 31894 | - | 53499 | 90 | 21.5 | -22.7 | YP_224008 | 5' arm 3' arm | ||
| 31897 | - | 54320 | 87 | 22 | -32.7 | YP_224008 | 5' arm 3' arm | ||
| 31773 | + | 54333 | 89 | 22.5 | -24.9 | YP_224008 | 5' arm 3' arm | ||
| 31895 | - | 53907 | 89 | 21.5 | -27 | YP_224008 | 5' arm 3' arm | ||
| 31898 | - | 54536 | 89 | 22 | -30.3 | YP_224008 | 5' arm 3' arm | ||
| 31893 | - | 52701 | 85 | 19.5 | -23.3 | YP_224007 | 5' arm 3' arm | ||
| 31772 | + | 52615 | 89 | 20 | -27.1 | YP_224007 | 5' arm 3' arm | ||
| 31892 | - | 51830 | 86 | 20.5 | -20.6 | YP_224006 | 5' arm 3' arm | ||
| 31890 | - | 51338 | 89 | 20 | -20.5 | YP_224006 | 5' arm 3' arm | ||
| 31889 | - | 51010 | 90 | 22 | -22.7 | YP_224006 | 5' arm 3' arm | ||
| 31891 | - | 51661 | 90 | 21.5 | -19.8 | YP_224006 | 5' arm 3' arm | ||
| 31888 | - | 50850 | 88 | 20.5 | -20.6 | YP_224006 | 5' arm 3' arm | ||
| 31771 | + | 52190 | 90 | 21 | -25.2 | YP_224006 | 5' arm 3' arm | ||
| 31770 | + | 51983 | 87 | 19 | -19.5 | YP_224006 | 5' arm 3' arm | ||
| 31769 | + | 51474 | 90 | 19 | -23 | YP_224006 | 5' arm 3' arm | ||
| 31768 | + | 49378 | 84 | 21 | -24.7 | YP_224004 | 5' arm 3' arm | ||
| 31886 | - | 49353 | 90 | 23.5 | -21.8 | YP_224004 | 5' arm 3' arm | ||
| 31885 | - | 49065 | 89 | 21.5 | -26.6 | YP_224003 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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