miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31801	-	9063	89	20	-28.3	YP_223938		5' arm      3' arm
31821	-	19895	90	23	-28	YP_223954		5' arm      3' arm
31778	+	61392	90	21	-27.9	YP_224012		5' arm      3' arm
31824	-	21103	90	20.5	-27.8			5' arm      3' arm
31882	-	46678	90	20.5	-27.7	YP_224000		5' arm      3' arm
31843	-	29350	85	19	-27.7	YP_223976		5' arm      3' arm
31802	-	9356	89	22	-27.7	YP_223938		5' arm      3' arm
31853	-	31815	89	19	-27.6	YP_223982		5' arm      3' arm
31846	-	29958	89	22	-27.51	YP_223978		5' arm      3' arm
31857	-	33644	82	20.5	-27.5	YP_223983		5' arm      3' arm
31851	-	31425	88	19	-27.3			5' arm      3' arm
31715	+	3254	87	19.5	-27.3	YP_223931		5' arm      3' arm
31873	-	40551	90	21.5	-27.2	YP_223993		5' arm      3' arm
31772	+	52615	89	20	-27.1	YP_224007		5' arm      3' arm
31816	-	17424	86	24.5	-27	YP_223952		5' arm      3' arm
31895	-	53907	89	21.5	-27	YP_224008		5' arm      3' arm
31774	+	55068	77	20	-26.81	YP_224009		5' arm      3' arm
31749	+	31338	88	23	-26.8			5' arm      3' arm
31728	+	14276	90	19	-26.8	YP_223946		5' arm      3' arm
31796	-	7704	87	19	-26.8	YP_223937		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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