miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31719	+	8311	90	19	-20.5	YP_223937		5' arm      3' arm
31766	+	48380	89	19	-24.6	YP_224002		5' arm      3' arm
31874	-	40672	85	19	-24.2	YP_223993		5' arm      3' arm
31755	+	35691	87	19	-20.1	YP_223986		5' arm      3' arm
31717	+	4655	90	19	-22.6	YP_223931		5' arm      3' arm
31881	-	46320	89	19	-21.9	YP_223999		5' arm      3' arm
31796	-	7704	87	19	-26.8	YP_223937		5' arm      3' arm
31776	+	57954	90	19	-20.9	YP_224010		5' arm      3' arm
31757	+	37143	90	19	-19.4	YP_223989		5' arm      3' arm
31722	+	9348	88	19	-20	YP_223938		5' arm      3' arm
31851	-	31425	88	19	-27.3			5' arm      3' arm
31754	+	34312	88	19	-32.1	YP_223984		5' arm      3' arm
31817	-	17841	86	19	-21.9	YP_223952		5' arm      3' arm
31770	+	51983	87	19	-19.5	YP_224006		5' arm      3' arm
31875	-	40888	87	19	-21.8	YP_223993		5' arm      3' arm
31797	-	7799	90	19	-20.2	YP_223937		5' arm      3' arm
31739	+	23253	90	19.5	-22.2	YP_223957		5' arm      3' arm
31726	+	10825	87	19.5	-19.7	YP_223939		5' arm      3' arm
31740	+	24416	90	19.5	-24.5	YP_223961		5' arm      3' arm
31738	+	23037	90	19.5	-19.4	YP_223957		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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