miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27948	+	41504	77	19	-23.8	YP_024900		5' arm      3' arm
27956	-	1537	89	19	-23.4	YP_024910		5' arm      3' arm
27993	-	42090	90	19	-20.9	YP_024900		5' arm      3' arm
27945	+	35483	89	19	-23	YP_024893		5' arm      3' arm
27943	+	33715	90	19	-24			5' arm      3' arm
27940	+	27711	87	19	-25.1			5' arm      3' arm
27989	-	37114	89	19	-21	YP_291192		5' arm      3' arm
27987	-	35997	89	19	-24.7	YP_024893		5' arm      3' arm
27971	-	17010	89	19	-24.6	YP_024871		5' arm      3' arm
27967	-	14643	90	19.5	-25	YP_024867		5' arm      3' arm
27937	+	24138	90	19.5	-19.4	YP_024878		5' arm      3' arm
27920	+	1968	80	19.5	-27.6	YP_024911		5' arm      3' arm
27973	-	17745	89	19.5	-24	YP_024872		5' arm      3' arm
27972	-	17102	88	19.5	-24	YP_024871		5' arm      3' arm
27995	-	46916	90	19.5	-24.7	YP_024920		5' arm      3' arm
27921	+	6031	89	19.5	-24.1	YP_024914		5' arm      3' arm
27988	-	36521	89	20	-21.1	YP_024894		5' arm      3' arm
27929	+	16699	90	20	-25.9	YP_024871		5' arm      3' arm
27979	-	25833	86	20	-22.6	YP_024895		5' arm      3' arm
27978	-	25028	89	20	-23.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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