miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
55733720 NC_006444.1 Gremmeniella abietina RNA virus MS2 RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30375 + 925 86 23.5 -20.1 YP_138540 5' arm      3' arm
30376 + 1415 88 20 -20.2 YP_138540 5' arm      3' arm
30378 - 884 90 20.5 -19.5 YP_138540 5' arm      3' arm
30377 - 388 89 19.5 -24.4 YP_138540 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.