miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
50234106 NC_005975.1 Maize mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28592 + 520 87 19.5 -25.2 YP_052850 5' arm      3' arm
28596 - 11784 90 21.5 -21.2 YP_052855 5' arm      3' arm
28595 - 6189 90 24.5 -21.8 5' arm      3' arm
28594 - 3460 89 23.5 -19.4 YP_052852 5' arm      3' arm
28593 - 606 87 23 -20.7 YP_052850 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.