miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56692908 NC_006552.1 Pseudomonas aeruginosa phage F116

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
30867 - 31370 90 23.5 -27.9 YP_164308 5' arm      3' arm
30698 + 4682 90 23.5 -29.5 YP_164272 5' arm      3' arm
30858 - 29829 89 23.5 -22.8 YP_164306 5' arm      3' arm
30761 + 34247 86 23.5 -21.6 YP_164313 5' arm      3' arm
30891 - 42777 90 23.5 -19.54 YP_164319 5' arm      3' arm
30752 + 29503 86 23.5 -35.5 YP_164306 5' arm      3' arm
30705 + 6736 87 23.5 -19.5 YP_164274 5' arm      3' arm
30841 - 21964 89 23 -22.6 YP_164300 5' arm      3' arm
30913 - 51461 89 23 -22.9 YP_164323 5' arm      3' arm
30877 - 36472 88 23 -28.8 YP_164315 5' arm      3' arm
30938 - 62288 86 23 -25.1 YP_164331 5' arm      3' arm
30937 - 62027 90 23 -21.1 YP_164330 5' arm      3' arm
30847 - 24572 90 23 -30.2 YP_164303 5' arm      3' arm
30711 + 7963 89 23 -21.4 YP_164275 5' arm      3' arm
30762 + 34973 90 23 -22.1 YP_164314 5' arm      3' arm
30733 + 16814 90 23 -19.4 5' arm      3' arm
30728 + 15051 90 23 -19.4 5' arm      3' arm
30810 + 62009 87 23 -23.7 YP_164330 5' arm      3' arm
30911 - 50183 90 23 -25.4 YP_164323 5' arm      3' arm
30868 - 31995 87 23 -21.7 YP_164309 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.