miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160529 AC_000008.1 Human adenovirus type 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
215 + 351 90 22 -25.5 5' arm      3' arm
246 - 10728 87 23 -36.1 5' arm      3' arm
229 + 10883 89 21.5 -21.9 5' arm      3' arm
228 + 10793 90 23 -22.6 5' arm      3' arm
239 - 2186 89 21.5 -29.2 AP_000198 5' arm      3' arm
240 - 5217 89 20 -25.1 AP_000201 5' arm      3' arm
216 + 4526 90 25 -29.9 AP_000201 5' arm      3' arm
217 + 4627 83 19.5 -20.7 AP_000201 5' arm      3' arm
218 + 5302 88 25.5 -25.9 AP_000201 5' arm      3' arm
222 + 8344 90 20 -28.2 AP_000202 5' arm      3' arm
242 - 6428 86 20 -22.8 AP_000202 5' arm      3' arm
241 - 5856 88 20 -20.4 AP_000202 5' arm      3' arm
243 - 8432 87 19 -26.02 AP_000202 5' arm      3' arm
220 + 5997 88 23 -25.5 AP_000202 5' arm      3' arm
221 + 6607 86 22.5 -28.2 AP_000202 5' arm      3' arm
219 + 5477 89 19.5 -20.1 AP_000202 5' arm      3' arm
227 + 10432 90 21 -24 AP_000203 5' arm      3' arm
226 + 10079 75 21 -25.3 AP_000203 5' arm      3' arm
244 - 9105 86 20.5 -25.6 AP_000203 5' arm      3' arm
223 + 8668 90 22.5 -21.6 AP_000203 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.