miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11187	-	10605	88	26.5	-23.43	NP_148799		5' arm      3' arm
11181	+	50314	87	26	-19.8	NP_148844		5' arm      3' arm
11197	-	68154	87	25	-21.2	NP_148869		5' arm      3' arm
11185	+	83660	80	24.5	-21.8	NP_148885		5' arm      3' arm
11175	+	30391	90	24	-21.8	NP_148819		5' arm      3' arm
11177	+	40048	90	24	-23.9	NP_148832		5' arm      3' arm
11190	-	23568	85	23.5	-20.1	NP_148813		5' arm      3' arm
11184	+	80770	89	23	-23.8	NP_148882		5' arm      3' arm
11172	+	22431	84	23	-22.4			5' arm      3' arm
11176	+	37664	88	23	-20.2	NP_148830		5' arm      3' arm
11183	+	58165	86	22.5	-23			5' arm      3' arm
11179	+	49282	90	22.5	-22.9	NP_148844		5' arm      3' arm
11202	-	93201	89	22	-22.3	NP_148895		5' arm      3' arm
11182	+	54800	89	21.5	-20.6	NP_148852		5' arm      3' arm
11188	-	11981	76	21.5	-22.7			5' arm      3' arm
11174	+	29446	89	21.5	-24.6	NP_148817		5' arm      3' arm
11198	-	77769	89	21.5	-25.7	NP_148879		5' arm      3' arm
11199	-	82022	90	21	-25.02	NP_148883		5' arm      3' arm
11180	+	50221	89	21	-20.4	NP_148844		5' arm      3' arm
11186	+	86802	88	20.5	-23.2	NP_148888		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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