miRNA display CGI


Results 1 - 11 of 11 are showing below:
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GenBank Identifier RefSeq Acc. Name
19387576 NC_003436.1 Porcine epidemic diarrhea virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13538 + 27321 88 22 -19.9 NP_598314 5' arm      3' arm
13537 + 23488 90 25.5 -24.9 NP_598310 5' arm      3' arm
13536 + 19383 89 19.5 -19.7 NP_598309 5' arm      3' arm
13535 + 18562 90 20 -21.2 NP_598309 5' arm      3' arm
13534 + 12703 89 24.5 -20 NP_598309 5' arm      3' arm
13533 + 12596 90 22 -26.3 NP_598309 5' arm      3' arm
13532 + 9742 87 25 -23.5 NP_598309 5' arm      3' arm
13531 + 6260 90 24 -27 NP_598309 5' arm      3' arm
13530 + 4729 90 21 -23.3 NP_598309 5' arm      3' arm
13529 + 4564 85 23 -24.9 NP_598309 5' arm      3' arm
13528 + 59 87 24.5 -24.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.