miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9368 - 183428 89 23.5 -21.3 NP_064241 5' arm      3' arm
9367 - 179129 89 19.5 -21.2 NP_064238 5' arm      3' arm
9366 - 178651 89 22.5 -22.1 NP_064238 5' arm      3' arm
9365 - 175938 89 22.5 -19.9 NP_064236 5' arm      3' arm
9364 - 175744 89 22.5 -21.4 NP_064236 5' arm      3' arm
9363 - 170288 87 19 -27.2 NP_064231 5' arm      3' arm
9362 - 165979 89 22 -20.1 NP_064226 5' arm      3' arm
9361 - 156383 90 19.5 -26.9 NP_064216 5' arm      
9360 - 155112 85 20 -20.5 NP_064215 5' arm      3' arm
9359 - 154020 90 21.5 -22.9 NP_064213 5' arm      3' arm
9358 - 152799 90 23.5 -26 5' arm      3' arm
9357 - 152249 89 27.5 -27.6 NP_064211 5' arm      3' arm
9356 - 150095 89 19 -21.4 NP_064210 5' arm      3' arm
9355 - 149332 89 22 -27.3 NP_064209 5' arm      3' arm
9354 - 147815 90 22 -22.4 NP_064207 5' arm      3' arm
9353 - 142104 87 19.5 -26.4 5' arm      3' arm
9352 - 141764 82 19.5 -23.2 NP_064205 5' arm      3' arm
9351 - 141076 89 20.5 -22.8 NP_064205 5' arm      3' arm
9350 - 140237 87 20.5 -20.9 NP_064205 5' arm      3' arm
9349 - 139169 90 19 -24.1 NP_064205 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.