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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9376 | - | 194245 | 89 | 20 | -21.3 | NP_064249 | 5' arm 3' arm | ||
9374 | - | 191352 | 89 | 19 | -20.7 | NP_064247 | 5' arm 3' arm | ||
9173 | + | 191475 | 90 | 21 | -28.2 | NP_064247 | 5' arm 3' arm | ||
9375 | - | 191824 | 88 | 19 | -24.2 | NP_064247 | 5' arm 3' arm | ||
9172 | + | 188650 | 90 | 23.5 | -20.4 | NP_064246 | 5' arm 3' arm | ||
9373 | - | 189496 | 88 | 22 | -24.7 | NP_064246 | 5' arm 3' arm | ||
9171 | + | 188550 | 89 | 22.5 | -28.6 | NP_064246 | 5' arm 3' arm | ||
9371 | - | 187205 | 88 | 23 | -25.9 | NP_064245 | 5' arm 3' arm | ||
9372 | - | 187904 | 89 | 20 | -22.7 | NP_064245 | 5' arm 3' arm | ||
9370 | - | 186103 | 90 | 19 | -20.3 | NP_064244 | 5' arm 3' arm | ||
9368 | - | 183428 | 89 | 23.5 | -21.3 | NP_064241 | 5' arm 3' arm | ||
9369 | - | 183760 | 88 | 21 | -19.8 | NP_064241 | 5' arm 3' arm | ||
9367 | - | 179129 | 89 | 19.5 | -21.2 | NP_064238 | 5' arm 3' arm | ||
9366 | - | 178651 | 89 | 22.5 | -22.1 | NP_064238 | 5' arm 3' arm | ||
9168 | + | 175670 | 90 | 22 | -25 | NP_064236 | 5' arm 3' arm | ||
9364 | - | 175744 | 89 | 22.5 | -21.4 | NP_064236 | 5' arm 3' arm | ||
9365 | - | 175938 | 89 | 22.5 | -19.9 | NP_064236 | 5' arm 3' arm | ||
9166 | + | 172819 | 90 | 19 | -26.94 | NP_064233 | 5' arm 3' arm | ||
9165 | + | 171096 | 86 | 22 | -20.2 | NP_064232 | 5' arm 3' arm | ||
9164 | + | 170568 | 90 | 22 | -19.7 | NP_064231 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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