miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20806004 NC_003849.1 Plantago asiatica mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15290 - 820 90 21.5 -33.2 NP_620836 5' arm      3' arm
15291 - 1481 90 23 -23 NP_620836 5' arm      3' arm
15292 - 1994 90 23 -21 NP_620836 5' arm      3' arm
15293 - 3482 89 21.5 -25.3 NP_620836 5' arm      3' arm
15294 - 3976 90 20 -20.3 NP_620836 5' arm      3' arm
15295 - 5121 89 23 -24 NP_620839 5' arm      3' arm
15296 - 5823 89 25.5 -24.5 NP_620840 5' arm      3' arm
15297 - 5932 90 23.5 -21 NP_620840 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.