miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630386 NC_001900.1 Mycobacteriophage D29

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7241 + 45932 89 21 -21.5 NP_046889 5' arm      3' arm
7242 + 46171 90 22 -26.3 NP_046891 5' arm      3' arm
7243 + 46421 85 21 -23.5 NP_046892 5' arm      3' arm
7244 + 46593 90 21 -23.1 NP_046893 5' arm      3' arm
7245 + 46920 90 21 -24.3 NP_046894 5' arm      3' arm
7246 + 47022 87 20 -28 NP_046894 5' arm      3' arm
7247 + 47387 87 23 -24.3 NP_046894 5' arm      3' arm
7248 + 47805 89 21.5 -26.5 NP_046895 5' arm      3' arm
7249 + 48295 89 22.5 -21.1 5' arm      3' arm
7250 + 48414 89 22.5 -20.7 5' arm      3' arm
7251 + 48862 88 28 -30.6 5' arm      3' arm
7252 + 48978 90 23 -32.1 5' arm      3' arm
7253 - 146 89 20.5 -24.9 5' arm      3' arm
7254 - 375 82 21.5 -32 5' arm      3' arm
7255 - 596 90 21 -25.9 NP_046819 5' arm      3' arm
7256 - 703 86 19 -21.6 NP_046819 5' arm      3' arm
7257 - 1019 89 20 -25.3 NP_046819 5' arm      3' arm
7258 - 1596 87 22.5 -36.5 NP_046820 5' arm      3' arm
7259 - 1757 90 20 -24.6 NP_046820 5' arm      3' arm
7260 - 2026 90 24 -20.3 NP_046820 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.