miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56698748 NC_006563.1 Trichechus manatus latirostris papillomavirus type 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31275 - 5307 88 20 -20.8 YP_164626 5' arm      3' arm
31274 - 3384 89 20 -20.7 YP_164624 5' arm      3' arm
31273 - 3263 90 22.5 -33 YP_164624 5' arm      3' arm
31272 - 1059 90 23 -20.92 YP_164623 5' arm      3' arm
31271 + 4770 89 22.5 -33.6 YP_164626 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.