miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22788711 NC_004156.1 Heliothis zea virus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16626 + 7969 88 23 -21 5' arm      3' arm
16627 + 11143 87 19.5 -19.4 NP_690423 5' arm      3' arm
16628 + 35467 78 21.5 -22.5 NP_690447 5' arm      3' arm
16629 + 39304 89 22.5 -25.4 NP_690450 5' arm      3' arm
16630 + 39526 89 23.5 -22.2 NP_690450 5' arm      3' arm
16631 + 39652 90 25 -21.1 NP_690450 5' arm      3' arm
16632 + 40560 89 21.5 -20.1 NP_690450 5' arm      3' arm
16633 + 56814 82 21 -25.4 5' arm      3' arm
16634 + 57664 84 19 -21.4 NP_690460 5' arm      3' arm
16635 + 57809 88 21.5 -23.4 NP_690460 5' arm      3' arm
16636 + 62672 86 21.5 -21.46 NP_690465 5' arm      3' arm
16637 + 67380 90 24 -22.4 NP_690469 5' arm      3' arm
16638 + 75421 85 20.5 -22.5 NP_690473 5' arm      3' arm
16639 + 78886 90 19.5 -22.1 NP_690476 5' arm      3' arm
16640 + 81086 89 21 -20 NP_690477 5' arm      3' arm
16641 + 90262 87 23.5 -23.8 NP_690481 5' arm      3' arm
16642 + 92159 79 20 -24.7 NP_690481 5' arm      3' arm
16643 + 99501 90 21 -24.5 NP_690488 5' arm      3' arm
16644 + 101712 89 21 -20.2 NP_690489 5' arm      3' arm
16645 + 103109 90 24 -21 NP_690489 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.