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GenBank Identifier | RefSeq Acc. | Name |
22788711 | NC_004156.1 | Heliothis zea virus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
16660 | + | 222971 | 88 | 25.5 | -28.94 | NP_690573 | 5' arm 3' arm | ||
16703 | - | 227138 | 90 | 21.5 | -22.3 | NP_690573 | 5' arm 3' arm | ||
16659 | + | 217171 | 89 | 22 | -24.5 | NP_690567 | 5' arm 3' arm | ||
16702 | - | 214185 | 80 | 19 | -23.3 | NP_690564 | 5' arm 3' arm | ||
16658 | + | 214110 | 86 | 20 | -20.6 | NP_690564 | 5' arm 3' arm | ||
16701 | - | 213982 | 89 | 19.5 | -22.7 | NP_690564 | 5' arm 3' arm | ||
16700 | - | 211467 | 89 | 21.5 | -25.5 | NP_690563 | 5' arm 3' arm | ||
16698 | - | 205724 | 89 | 25 | -23.4 | NP_690559 | 5' arm 3' arm | ||
16699 | - | 207372 | 86 | 25.5 | -28.7 | NP_690559 | 5' arm 3' arm | ||
16657 | + | 207380 | 86 | 19.5 | -25.9 | NP_690559 | 5' arm 3' arm | ||
16697 | - | 196670 | 89 | 19.5 | -22 | NP_690553 | 5' arm 3' arm | ||
16695 | - | 180528 | 87 | 23 | -21.9 | NP_690542 | 5' arm 3' arm | ||
16696 | - | 181102 | 90 | 22 | -22.5 | NP_690542 | 5' arm 3' arm | ||
16655 | + | 180844 | 89 | 19 | -22.31 | NP_690542 | 5' arm 3' arm | ||
16694 | - | 178642 | 90 | 21 | -20.4 | NP_690541 | 5' arm 3' arm | ||
16654 | + | 175542 | 84 | 25.5 | -22.5 | NP_690538 | 5' arm 3' arm | ||
16693 | - | 174466 | 89 | 21 | -28 | NP_690538 | 5' arm 3' arm | ||
16692 | - | 172863 | 87 | 22 | -19.8 | NP_690537 | 5' arm 3' arm | ||
16653 | + | 170034 | 90 | 21 | -30 | NP_690534 | 5' arm 3' arm | ||
16691 | - | 166060 | 90 | 24 | -21 | NP_690531 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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