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GenBank Identifier | RefSeq Acc. | Name |
22788711 | NC_004156.1 | Heliothis zea virus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
16649 | + | 122878 | 85 | 29.5 | -27.3 | NP_690502 | 5' arm 3' arm | ||
16671 | - | 72925 | 81 | 29 | -21.6 | NP_690471 | 5' arm 3' arm | ||
16669 | - | 58885 | 87 | 26.5 | -30.7 | NP_690462 | 5' arm 3' arm | ||
16666 | - | 53470 | 90 | 26 | -27.4 | NP_690456 | 5' arm 3' arm | ||
16699 | - | 207372 | 86 | 25.5 | -28.7 | NP_690559 | 5' arm 3' arm | ||
16684 | - | 135420 | 90 | 25.5 | -25.8 | NP_690514 | 5' arm 3' arm | ||
16654 | + | 175542 | 84 | 25.5 | -22.5 | NP_690538 | 5' arm 3' arm | ||
16660 | + | 222971 | 88 | 25.5 | -28.94 | NP_690573 | 5' arm 3' arm | ||
16687 | - | 144766 | 90 | 25 | -26.1 | 5' arm 3' arm | |||
16680 | - | 114050 | 89 | 25 | -24.7 | NP_690495 | 5' arm 3' arm | ||
16698 | - | 205724 | 89 | 25 | -23.4 | NP_690559 | 5' arm 3' arm | ||
16631 | + | 39652 | 90 | 25 | -21.1 | NP_690450 | 5' arm 3' arm | ||
16648 | + | 112029 | 90 | 24.5 | -21.7 | NP_690494 | 5' arm 3' arm | ||
16688 | - | 145534 | 89 | 24.5 | -21.4 | NP_690518 | 5' arm 3' arm | ||
16677 | - | 109209 | 87 | 24.5 | -21.9 | NP_690493 | 5' arm 3' arm | ||
16691 | - | 166060 | 90 | 24 | -21 | NP_690531 | 5' arm 3' arm | ||
16645 | + | 103109 | 90 | 24 | -21 | NP_690489 | 5' arm 3' arm | ||
16637 | + | 67380 | 90 | 24 | -22.4 | NP_690469 | 5' arm 3' arm | ||
16690 | - | 164005 | 90 | 24 | -31.5 | NP_690528 | 5' arm 3' arm | ||
16673 | - | 80567 | 90 | 24 | -19.4 | NP_690477 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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