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| GenBank Identifier | RefSeq Acc. | Name |
| 22788711 | NC_004156.1 | Heliothis zea virus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16680 | - | 114050 | 89 | 25 | -24.7 | NP_690495 | 5' arm 3' arm | ||
| 16650 | + | 123043 | 89 | 24 | -24.7 | NP_690502 | 5' arm 3' arm | ||
| 16681 | - | 126253 | 90 | 20.5 | -24.54 | NP_690507 | 5' arm 3' arm | ||
| 16643 | + | 99501 | 90 | 21 | -24.5 | NP_690488 | 5' arm 3' arm | ||
| 16659 | + | 217171 | 89 | 22 | -24.5 | NP_690567 | 5' arm 3' arm | ||
| 16672 | - | 76897 | 89 | 19.5 | -24.4 | NP_690474 | 5' arm 3' arm | ||
| 16646 | + | 106958 | 88 | 20 | -24.3 | NP_690491 | 5' arm 3' arm | ||
| 16656 | + | 201860 | 86 | 20.5 | -24.1 | 5' arm 3' arm | |||
| 16647 | + | 109996 | 86 | 21 | -24 | NP_690494 | 5' arm 3' arm | ||
| 16662 | - | 15878 | 88 | 22.5 | -23.9 | NP_690428 | 5' arm 3' arm | ||
| 16641 | + | 90262 | 87 | 23.5 | -23.8 | NP_690481 | 5' arm 3' arm | ||
| 16635 | + | 57809 | 88 | 21.5 | -23.4 | NP_690460 | 5' arm 3' arm | ||
| 16698 | - | 205724 | 89 | 25 | -23.4 | NP_690559 | 5' arm 3' arm | ||
| 16702 | - | 214185 | 80 | 19 | -23.3 | NP_690564 | 5' arm 3' arm | ||
| 16685 | - | 140108 | 89 | 21.5 | -23.3 | NP_690516 | 5' arm 3' arm | ||
| 16678 | - | 109344 | 90 | 20.5 | -23.11 | NP_690493 | 5' arm 3' arm | ||
| 16679 | - | 112589 | 85 | 23.5 | -22.7 | NP_690494 | 5' arm 3' arm | ||
| 16701 | - | 213982 | 89 | 19.5 | -22.7 | NP_690564 | 5' arm 3' arm | ||
| 16664 | - | 41446 | 87 | 22.5 | -22.7 | NP_690450 | 5' arm 3' arm | ||
| 16654 | + | 175542 | 84 | 25.5 | -22.5 | NP_690538 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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