miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22788711 NC_004156.1 Heliothis zea virus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16629 + 39304 89 22.5 -25.4 NP_690450 5' arm      3' arm
16630 + 39526 89 23.5 -22.2 NP_690450 5' arm      3' arm
16631 + 39652 90 25 -21.1 NP_690450 5' arm      3' arm
16628 + 35467 78 21.5 -22.5 NP_690447 5' arm      3' arm
16627 + 11143 87 19.5 -19.4 NP_690423 5' arm      3' arm
16639 + 78886 90 19.5 -22.1 NP_690476 5' arm      3' arm
16641 + 90262 87 23.5 -23.8 NP_690481 5' arm      3' arm
16654 + 175542 84 25.5 -22.5 NP_690538 5' arm      3' arm
16653 + 170034 90 21 -30 NP_690534 5' arm      3' arm
16652 + 146304 89 23 -26.3 NP_690519 5' arm      3' arm
16651 + 143798 87 19.5 -21 NP_690517 5' arm      3' arm
16650 + 123043 89 24 -24.7 NP_690502 5' arm      3' arm
16649 + 122878 85 29.5 -27.3 NP_690502 5' arm      3' arm
16647 + 109996 86 21 -24 NP_690494 5' arm      3' arm
16648 + 112029 90 24.5 -21.7 NP_690494 5' arm      3' arm
16646 + 106958 88 20 -24.3 NP_690491 5' arm      3' arm
16644 + 101712 89 21 -20.2 NP_690489 5' arm      3' arm
16643 + 99501 90 21 -24.5 NP_690488 5' arm      3' arm
16645 + 103109 90 24 -21 NP_690489 5' arm      3' arm
16642 + 92159 79 20 -24.7 NP_690481 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.