miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1279	-	3907	89	19.5	-30			5' arm      3' arm
1263	+	14609	89	22	-28.9	NP_052269		5' arm      3' arm
1252	+	342	86	20.5	-26.7	NP_052249		5' arm      3' arm
1272	+	27360	90	20.5	-26	NP_052289		5' arm      3' arm
1273	+	28755	89	20.5	-25.9	NP_052289		5' arm      3' arm
1265	+	15567	89	22.5	-25.8	NP_052270		5' arm      3' arm
1291	-	16389	87	20	-25.6	NP_052272		5' arm      3' arm
1269	+	18953	89	19.5	-25.5	NP_052274		5' arm      3' arm
1259	+	6258	85	19	-25.3	NP_052254		5' arm      3' arm
1292	-	16767	90	19.5	-24.6	NP_052273		5' arm      3' arm
1258	+	3540	85	19	-24.5	NP_052251		5' arm      3' arm
1286	-	8481	87	19	-24.3	NP_052259		5' arm      3' arm
1271	+	27096	89	23.5	-24.2	NP_052289		5' arm      3' arm
1295	-	18875	89	19.5	-24.2	NP_052273		5' arm      3' arm
1285	-	7955	90	22.5	-24.2	NP_052258		5' arm      3' arm
1293	-	17833	90	19.5	-24.12	NP_052273		5' arm      3' arm
1275	-	1148	90	21	-24.1	NP_052249		5' arm      3' arm
1256	+	1764	90	19.5	-23.9	NP_052250		5' arm      3' arm
1281	-	5107	87	20	-23.6	NP_052253		5' arm      3' arm
1282	-	5659	88	24.5	-23.5	NP_052253		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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