miRNA display CGI


Results 1 - 14 of 14 are showing below:
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GenBank Identifier RefSeq Acc. Name
78484344 NC_007522.1 Schizochytrium single-stranded RNA virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
33194 + 1151 74 21 -26.4 YP_392465 5' arm      3' arm
33195 + 2124 90 21.5 -21.7 YP_392465 5' arm      3' arm
33196 + 3565 90 21 -26.6 YP_392465 5' arm      3' arm
33197 + 4557 75 20.5 -29.4 YP_392465 5' arm      3' arm
33198 + 4643 89 19 -26.9 YP_392465 5' arm      3' arm
33199 + 5766 89 19.5 -24.6 YP_398835 5' arm      3' arm
33200 + 6449 90 20.5 -27.7 YP_398835 5' arm      3' arm
33201 + 7015 89 21.5 -21.5 YP_398835 5' arm      3' arm
33202 - 1771 88 20.5 -22.1 YP_392465 5' arm      3' arm
33203 - 2213 90 20.5 -23.7 YP_392465 5' arm      3' arm
33204 - 3971 83 21.5 -26 YP_392465 5' arm      3' arm
33205 - 4640 90 19.5 -25.2 YP_392465 5' arm      3' arm
33206 - 5757 90 21 -23.5 5' arm      3' arm
33207 - 6346 90 19 -24.4 YP_398835 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.