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GenBank Identifier | RefSeq Acc. | Name |
78484344 | NC_007522.1 | Schizochytrium single-stranded RNA virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
33194 | + | 1151 | 74 | 21 | -26.4 | YP_392465 | 5' arm 3' arm | ||
33195 | + | 2124 | 90 | 21.5 | -21.7 | YP_392465 | 5' arm 3' arm | ||
33196 | + | 3565 | 90 | 21 | -26.6 | YP_392465 | 5' arm 3' arm | ||
33197 | + | 4557 | 75 | 20.5 | -29.4 | YP_392465 | 5' arm 3' arm | ||
33198 | + | 4643 | 89 | 19 | -26.9 | YP_392465 | 5' arm 3' arm | ||
33199 | + | 5766 | 89 | 19.5 | -24.6 | YP_398835 | 5' arm 3' arm | ||
33200 | + | 6449 | 90 | 20.5 | -27.7 | YP_398835 | 5' arm 3' arm | ||
33201 | + | 7015 | 89 | 21.5 | -21.5 | YP_398835 | 5' arm 3' arm | ||
33202 | - | 1771 | 88 | 20.5 | -22.1 | YP_392465 | 5' arm 3' arm | ||
33203 | - | 2213 | 90 | 20.5 | -23.7 | YP_392465 | 5' arm 3' arm | ||
33204 | - | 3971 | 83 | 21.5 | -26 | YP_392465 | 5' arm 3' arm | ||
33205 | - | 4640 | 90 | 19.5 | -25.2 | YP_392465 | 5' arm 3' arm | ||
33206 | - | 5757 | 90 | 21 | -23.5 | 5' arm 3' arm | |||
33207 | - | 6346 | 90 | 19 | -24.4 | YP_398835 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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