miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9790292 NC_001543.1 Rabbit hemorrhagic disease virus-FRG

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3274 + 1022 88 25 -24.3 NP_062875 5' arm      3' arm
3275 + 1142 89 21.5 -21 NP_062875 5' arm      3' arm
3276 + 3592 90 25 -28.3 NP_062875 5' arm      3' arm
3277 + 4026 89 21.5 -22.6 NP_062875 5' arm      3' arm
3278 - 178 82 20.5 -20.4 NP_062875 5' arm      3' arm
3279 - 383 87 19 -25.6 NP_062875 5' arm      3' arm
3280 - 1230 89 20 -24.1 NP_062875 5' arm      3' arm
3281 - 1613 89 19.5 -19.8 NP_062875 5' arm      3' arm
3282 - 6474 89 19 -24.4 NP_062875 5' arm      3' arm
3283 - 6790 90 24 -22.3 NP_062875 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.