miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8800 + 6666 88 19.5 -19.4 5' arm      3' arm
8805 + 9180 90 20.5 -19.4 NP_061510 5' arm      3' arm
8792 + 2185 90 22 -19.4 NP_061499 5' arm      3' arm
8809 + 11749 89 19.5 -19.5 NP_061515 5' arm      3' arm
8861 + 42716 89 20 -19.6 NP_061561 5' arm      3' arm
8843 + 32169 90 19 -19.6 NP_061539 5' arm      3' arm
8828 + 20690 89 22 -19.6 NP_061523 5' arm      3' arm
8816 + 15727 89 20.5 -19.7 NP_061521 5' arm      3' arm
8918 - 40278 88 20 -19.7 NP_061557 5' arm      
8802 + 7095 87 20 -19.8 5' arm      3' arm
8872 + 53594 87 21.5 -19.9 5' arm      3' arm
8890 - 10224 89 20.5 -19.9 NP_061512 5' arm      
8831 + 26306 87 25 -19.9 5' arm      3' arm
8869 + 50828 89 20 -19.91 NP_061575 5' arm      3' arm
8915 - 35769 89 19 -20 NP_061547       3' arm
8838 + 29444 87 22 -20 NP_061536 5' arm      3' arm
8905 - 18932 87 20.5 -20 NP_061523 5' arm      3' arm
8810 + 11883 90 19 -20 NP_061515 5' arm      3' arm
8850 + 34898 86 24 -20.2 NP_061546 5' arm      3' arm
8855 + 38329 90 21 -20.2 NP_061552 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.