miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8836 + 28452 89 27.5 -35.9 5' arm      3' arm
8906 - 19102 90 26 -27.5 NP_061523 5' arm      3' arm
8831 + 26306 87 25 -19.9 5' arm      3' arm
8795 + 3055 89 24 -20.6 NP_061500 5' arm      3' arm
8835 + 27953 87 24 -29.4 NP_061531 5' arm      3' arm
8862 + 43081 90 24 -27.8 NP_061562 5' arm      3' arm
8877 - 1424 90 24 -22.9 NP_061498 5' arm      3' arm
8850 + 34898 86 24 -20.2 NP_061546 5' arm      3' arm
8813 + 14417 90 23.5 -24.7 NP_061518 5' arm      3' arm
8812 + 12116 87 23.5 -21.2 NP_061515 5' arm      3' arm
8798 + 6004 87 23.5 -23 NP_061504 5' arm      3' arm
8888 - 7168 90 23.5 -29.9 5' arm      3' arm
8874 + 54295 87 23.5 -24.1 NP_061583 5' arm      3' arm
8857 + 40069 86 23.5 -26.1 5' arm      3' arm
8897 - 14101 90 23 -22.9 NP_061517 5' arm      3' arm
8847 + 33367 89 23 -29.9 NP_061540 5' arm      3' arm
8829 + 24931 90 23 -22.8 NP_061526 5' arm      3' arm
8913 - 34922 90 23 -29.2 NP_061546 5' arm      3' arm
8923 - 43979 90 22.5 -21.6 5' arm      
8849 + 34792 89 22.5 -22.6 NP_061546 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.