miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8790	+	1128	89	21.5	-21.3	NP_061498		5' arm      3' arm
8877	-	1424	90	24	-22.9	NP_061498		5' arm      3' arm
8789	+	799	90	22	-21.4	NP_061498		5' arm      3' arm
8792	+	2185	90	22	-19.4	NP_061499		5' arm      3' arm
8794	+	2557	86	21	-21.5	NP_061500		5' arm      3' arm
8793	+	2442	90	21.5	-20.3	NP_061500		5' arm      3' arm
8879	-	2645	90	20	-28.7	NP_061500		5' arm      3' arm
8881	-	3470	90	19	-21	NP_061500		5' arm      3' arm
8880	-	3082	85	21.5	-22.9	NP_061500		5' arm      3' arm
8795	+	3055	89	24	-20.6	NP_061500		5' arm      3' arm
8878	-	2535	76	20	-20.7	NP_061500		5' arm      3' arm
8796	+	3599	89	22.5	-33.9	NP_061501		5' arm      3' arm
8883	-	4329	89	21.5	-27.5	NP_061501		5' arm      3' arm
8882	-	3830	89	20.5	-22.6	NP_061501		5' arm      3' arm
8797	+	3744	90	19	-22.8	NP_061501		5' arm      3' arm
8886	-	5079	89	21.5	-21	NP_061502		5' arm      3' arm
8887	-	5278	90	22.5	-23.8	NP_061502		5' arm      3' arm
8885	-	4950	90	19	-20.7	NP_061502		5' arm      3' arm
8884	-	4786	89	20	-21.4	NP_061502		5' arm      3' arm
8798	+	6004	87	23.5	-23	NP_061504		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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