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| GenBank Identifier | RefSeq Acc. | Name |
| 9627242 | NC_001564.1 | Cell fusing agent virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3383 | + | 3579 | 85 | 22.5 | -25.3 | NP_041725 | 5' arm 3' arm | ||
| 3384 | + | 3702 | 88 | 19.5 | -23.6 | NP_041725 | 5' arm 3' arm | ||
| 3385 | + | 8402 | 85 | 19.5 | -20 | NP_041725 | 5' arm 3' arm | ||
| 3386 | - | 2999 | 90 | 22 | -22.9 | NP_041725 | 5' arm 3' arm | ||
| 3387 | - | 8565 | 87 | 23.5 | -26.6 | NP_041725 | 5' arm 3' arm | ||
| 3388 | - | 9227 | 88 | 21.5 | -19.9 | NP_041725 | 5' arm 3' arm | ||
| 3389 | - | 10367 | 90 | 19.5 | -22.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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