miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627242 NC_001564.1 Cell fusing agent virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3383 + 3579 85 22.5 -25.3 NP_041725 5' arm      3' arm
3384 + 3702 88 19.5 -23.6 NP_041725 5' arm      3' arm
3385 + 8402 85 19.5 -20 NP_041725 5' arm      3' arm
3386 - 2999 90 22 -22.9 NP_041725 5' arm      3' arm
3387 - 8565 87 23.5 -26.6 NP_041725 5' arm      3' arm
3388 - 9227 88 21.5 -19.9 NP_041725 5' arm      3' arm
3389 - 10367 90 19.5 -22.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.