miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630315 NC_001886.1 Wheat streak mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7081 + 6478 82 22 -21.1 NP_046741 5' arm      3' arm
7082 + 9292 90 28.5 -23.2 5' arm      3' arm
7083 - 421 90 19 -23.3 NP_046741 5' arm      3' arm
7084 - 626 87 23 -21.8 NP_046741 5' arm      3' arm
7085 - 2291 90 23 -21.6 NP_046741 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.