miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20806010 NC_003852.1 Obuda pepper virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15300 - 2224 86 21 -21.8 NP_620841 5' arm      3' arm
15299 - 743 89 23 -20.4 NP_620841 5' arm      3' arm
15301 - 5932 90 22 -19.7 NP_620844 5' arm      3' arm
15298 + 6148 89 22 -19.6 NP_620844 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.