miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9625433 NC_001335.1 Mycobacterium phage L5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1425 - 322 82 20.5 -34.9 5' arm      3' arm
1506 - 38366 90 23 -34.3 NP_039722 5' arm      3' arm
1359 + 18381 90 20 -34.1 NP_039691 5' arm      3' arm
1472 - 16384 88 20.5 -33.7 NP_039690 5' arm      3' arm
1429 - 1655 89 20 -33.4 NP_039669 5' arm      3' arm
1333 + 2344 90 21 -31.82 NP_039671 5' arm      3' arm
1397 + 39168 89 22 -31.5 NP_039723 5' arm      3' arm
1453 - 10141 88 21.5 -31 NP_039679 5' arm      3' arm
1406 + 42396 88 22 -30.3 NP_039732 5' arm      3' arm
1380 + 31078 90 23 -30.3 NP_039710 5' arm      3' arm
1344 + 10276 89 19 -30.3 NP_039679 5' arm      3' arm
1502 - 35865 90 19 -30.1 NP_039717 5' arm      3' arm
1441 - 5667 89 19.5 -29.9 NP_039675 5' arm      3' arm
1383 + 32137 89 23 -29.8 5' arm      3' arm
1339 + 6390 90 21 -29.6 NP_039676 5' arm      3' arm
1525 - 51661 87 19 -29.5 5' arm      3' arm
1392 + 35776 90 21.5 -29.4 NP_039717 5' arm      3' arm
1459 - 12412 90 19.5 -29.4 5' arm      3' arm
1335 + 4157 90 19.5 -29.2 5' arm      3' arm
1349 + 12604 89 20 -29.1 NP_039683 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.