miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1467	-	14260	88	19	-25.5	NP_039686		5' arm      3' arm
1409	+	44966	89	21.5	-25.4			5' arm      3' arm
1490	-	26200	86	19.5	-25.3			5' arm      3' arm
1519	-	45808	90	19.5	-25.3	NP_039738		5' arm      3' arm
1481	-	20113	81	21	-25.2	NP_039692		5' arm      3' arm
1368	+	23824	87	20.5	-25.2	NP_039696		5' arm      3' arm
1345	+	10896	88	20	-25.2	NP_039680		5' arm      3' arm
1428	-	1562	90	20	-25.1	NP_039669		5' arm      3' arm
1396	+	39065	90	21	-24.9	NP_039723		5' arm      3' arm
1439	-	4366	86	20.5	-24.8			5' arm      3' arm
1437	-	3660	89	24.5	-24.8	NP_039673		5' arm      3' arm
1476	-	17572	89	20	-24.7	NP_039690		5' arm      3' arm
1373	+	26884	89	24.5	-24.7	NP_039701		5' arm      3' arm
1336	+	5258	88	20.5	-24.7	NP_039674		5' arm      3' arm
1446	-	7473	90	21.5	-24.7	NP_039677		5' arm      3' arm
1432	-	2430	89	19.5	-24.6	NP_039671		5' arm      3' arm
1410	+	45720	88	21.5	-24.6	NP_039738		5' arm      3' arm
1457	-	11921	89	21	-24.6	NP_039681		5' arm      3' arm
1515	-	43089	90	22.5	-24.5	NP_039733		5' arm      3' arm
1470	-	15299	90	19.5	-24.5	NP_039688		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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