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GenBank Identifier | RefSeq Acc. | Name |
66392052 | NC_007024.1 | Xanthomonas campestris pv. pelargonii phage Xp15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32324 | + | 37320 | 89 | 25.5 | -31.7 | 5' arm 3' arm | |||
32341 | - | 12026 | 90 | 25 | -24.1 | YP_239284 | 5' arm 3' arm | ||
32323 | + | 34974 | 89 | 24.5 | -34.7 | 5' arm 3' arm | |||
32340 | - | 9752 | 89 | 24 | -19.7 | YP_239279 | 5' arm 3' arm | ||
32339 | - | 8685 | 90 | 24 | -22.9 | YP_239278 | 3' arm | ||
32352 | - | 35586 | 89 | 23.5 | -23.9 | YP_239310 | |||
32343 | - | 19043 | 85 | 23.5 | -23.4 | YP_239291 | 3' arm | ||
32319 | + | 30925 | 79 | 23.5 | -25.7 | YP_239305 | 5' arm 3' arm | ||
32330 | + | 47258 | 85 | 23.5 | -22.8 | YP_239326 | 5' arm 3' arm | ||
32318 | + | 27914 | 88 | 23 | -25.6 | YP_239300 | 5' arm 3' arm | ||
32362 | - | 54866 | 90 | 23 | -30.1 | YP_239350 | 5' arm 3' arm | ||
32311 | + | 17872 | 90 | 23 | -25.7 | YP_239291 | 5' arm 3' arm | ||
32325 | + | 40375 | 90 | 23 | -21.5 | YP_239315 | 5' arm 3' arm | ||
32326 | + | 42621 | 90 | 22.5 | -22.4 | YP_239316 | 5' arm 3' arm | ||
32314 | + | 22712 | 90 | 22.5 | -21.09 | YP_239292 | 5' arm 3' arm | ||
32316 | + | 25530 | 90 | 22.5 | -25.6 | YP_239297 | 5' arm 3' arm | ||
32349 | - | 28921 | 90 | 22.5 | -24.6 | YP_239301 | 5' arm 3' arm | ||
32321 | + | 33927 | 86 | 22.5 | -26.5 | YP_239308 | 5' arm 3' arm | ||
32353 | - | 40176 | 86 | 22.5 | -29.1 | YP_239314 | 5' arm 3' arm | ||
32309 | + | 17095 | 89 | 22 | -24.6 | YP_239289 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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