miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
838	+	6427	90	21	-24.2	NP_050277		5' arm      3' arm
859	-	3437	88	21.5	-21.1	NP_050275		5' arm      3' arm
880	-	156758	88	21.5	-21.1	NP_050275		5' arm      3' arm
878	-	155440	90	23	-31.82	NP_050273		5' arm      3' arm
856	-	1859	85	19	-28.3	NP_050273		5' arm      3' arm
849	+	155352	87	19.5	-35.3	NP_050273		5' arm      3' arm
876	-	154837	89	21.5	-22	NP_050273		5' arm      3' arm
834	+	1411	90	21	-19.6	NP_050273		5' arm      3' arm
836	+	2355	89	19	-26	NP_050273		5' arm      3' arm
846	+	152197	87	23.5	-23.3	NP_050271		5' arm      3' arm
875	-	142608	89	19	-28.1	NP_050268		5' arm      3' arm
874	-	142503	89	20.5	-27.8	NP_050268		5' arm      3' arm
845	+	129579	89	29	-26.8	NP_050265		5' arm      3' arm
873	-	119237	87	22.5	-36.5	NP_050257		5' arm      3' arm
844	+	115990	90	24	-25.5	NP_050255		5' arm      3' arm
843	+	99137	88	20.5	-23.3	NP_050241		5' arm      3' arm
842	+	89319	80	20.5	-25.1	NP_050236		5' arm      3' arm
872	-	49081	90	24	-19.5	NP_050212		3' arm
871	-	13599	89	21.5	-27.4	NP_050186		5' arm      3' arm
869	-	10299	90	21	-20.4	NP_050184		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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