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GenBank Identifier | RefSeq Acc. | Name |
9633069 | NC_000898.1 | Human herpesvirus 6B |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
872 | - | 49081 | 90 | 24 | -19.5 | NP_050212 | 3' arm | ||
834 | + | 1411 | 90 | 21 | -19.6 | NP_050273 | 5' arm 3' arm | ||
848 | + | 154732 | 90 | 21 | -19.6 | NP_050176 | 5' arm 3' arm | ||
869 | - | 10299 | 90 | 21 | -20.4 | NP_050184 | 5' arm 3' arm | ||
854 | + | 160286 | 90 | 25.5 | -20.6 | NP_050180 | 5' arm 3' arm | ||
840 | + | 6965 | 90 | 25.5 | -20.6 | NP_050180 | 5' arm 3' arm | ||
847 | + | 152649 | 84 | 21.5 | -20.8 | 5' arm 3' arm | |||
859 | - | 3437 | 88 | 21.5 | -21.1 | NP_050275 | 5' arm 3' arm | ||
880 | - | 156758 | 88 | 21.5 | -21.1 | NP_050275 | 5' arm 3' arm | ||
876 | - | 154837 | 89 | 21.5 | -22 | NP_050273 | 5' arm 3' arm | ||
855 | - | 1516 | 89 | 21.5 | -22 | NP_050176 | 5' arm 3' arm | ||
870 | - | 10538 | 90 | 21.5 | -22.2 | NP_050184 | 5' arm | ||
851 | + | 158943 | 90 | 19.5 | -22.6 | 5' arm 3' arm | |||
837 | + | 5622 | 90 | 19.5 | -22.6 | 5' arm 3' arm | |||
867 | - | 9752 | 90 | 19.5 | -23 | NP_050184 | 5' arm 3' arm | ||
853 | + | 160165 | 85 | 19.5 | -23.2 | NP_050180 | 5' arm 3' arm | ||
839 | + | 6844 | 85 | 19.5 | -23.2 | NP_050180 | 5' arm 3' arm | ||
843 | + | 99137 | 88 | 20.5 | -23.3 | NP_050241 | 5' arm 3' arm | ||
846 | + | 152197 | 87 | 23.5 | -23.3 | NP_050271 | 5' arm 3' arm | ||
879 | - | 156646 | 90 | 26 | -23.6 | NP_050177 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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