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GenBank Identifier | RefSeq Acc. | Name |
39163614 | NC_005288.1 | Lily mottle virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
24997 | + | 197 | 90 | 22 | -31.1 | NP_945133 | 5' arm 3' arm | ||
24998 | + | 1914 | 90 | 20 | -21.3 | NP_945133 | 5' arm 3' arm | ||
24999 | + | 2673 | 89 | 21.5 | -26 | NP_945133 | 5' arm 3' arm | ||
25000 | + | 6369 | 89 | 23 | -19.96 | NP_945133 | 5' arm 3' arm | ||
25001 | - | 286 | 90 | 20 | -26.2 | NP_945133 | 5' arm 3' arm | ||
25002 | - | 451 | 90 | 20.5 | -25.4 | NP_945133 | 5' arm 3' arm | ||
25003 | - | 675 | 86 | 22 | -23.7 | NP_945133 | 5' arm 3' arm | ||
25004 | - | 2003 | 87 | 21 | -22.3 | NP_945133 | 5' arm 3' arm | ||
25005 | - | 2757 | 82 | 23.5 | -27.7 | NP_945133 | 5' arm 3' arm | ||
25006 | - | 5412 | 90 | 20 | -21.8 | NP_945133 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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