miRNA display CGI


Results 1 - 20 of 25 are showing below:
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GenBank Identifier RefSeq Acc. Name
74229684 NC_007383.1 Trichoplusia ni SNPV virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
32868 - 67668 90 19 -20.6 YP_308965 5' arm      3' arm
32870 - 85820 86 19 -26.81 YP_308983 5' arm      3' arm
32852 + 33920 78 19 -22.7 YP_308925 5' arm      3' arm
32849 + 406 86 19.5 -20.8 YP_308889 5' arm      3' arm
32871 - 100446 90 19.5 -25.1 YP_308997 5' arm      3' arm
32856 + 81900 89 20.5 -23.4 YP_308978 5' arm      3' arm
32851 + 22374 89 21 -24 YP_308911 5' arm      3' arm
32848 + 244 90 21 -20.6 YP_308889 5' arm      3' arm
32869 - 84656 90 21 -20.2 YP_308981 5' arm      3' arm
32855 + 69299 85 21.5 -31.7 YP_308966 5' arm      3' arm
32857 + 94023 90 21.5 -21.1 YP_308991 5' arm      3' arm
32858 + 94295 88 22 -25.4 YP_308991 5' arm      3' arm
32863 - 26597 85 22 -26.5 YP_308918 5' arm      3' arm
32854 + 64279 90 22.5 -20.22 YP_308961 5' arm      3' arm
32864 - 38993 89 23 -20.7 YP_308934 5' arm      3' arm
32862 + 125400 89 23.5 -22.2 5' arm      3' arm
32865 - 43280 89 23.5 -22.2 5' arm      3' arm
32860 + 103822 90 23.5 -28.3 YP_309002 5' arm      3' arm
32867 - 67357 87 24.5 -19.6 YP_308965 5' arm      3' arm
32861 + 125175 89 26.5 -24.1 YP_309026 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.