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| GenBank Identifier | RefSeq Acc. | Name |
| 9628574 | NC_001694.1 | Human papillomavirus - 61 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 4221 | + | 4552 | 90 | 21 | -21.6 | NP_043449 | 5' arm 3' arm | ||
| 4224 | - | 4990 | 89 | 20.5 | -20.3 | NP_043449 | 5' arm 3' arm | ||
| 4223 | - | 3476 | 90 | 23.5 | -22.4 | NP_043448 | 5' arm 3' arm | ||
| 4220 | + | 1032 | 90 | 19 | -20.8 | NP_043446 | 5' arm 3' arm | ||
| 4222 | - | 1121 | 90 | 21.5 | -20.3 | NP_043446 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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