miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627056 NC_001522.1 Bovine papillomavirus - 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3241 + 1674 89 23 -23.6 NP_056739 5' arm      3' arm
3242 + 4625 88 19 -30.1 NP_056743 5' arm      3' arm
3243 + 5890 90 21 -26.5 NP_056744 5' arm      3' arm
3244 - 1761 87 25 -21 NP_056739 5' arm      3' arm
3245 - 3352 90 21 -33.6 NP_056741 5' arm      3' arm
3246 - 3503 90 20 -26.4 NP_056740 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.