miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629553 NC_001826.1 Murid herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6105 + 3733 89 24 -19.6 5' arm      3' arm
6145 - 102104 89 23 -20.3 5' arm      3' arm
6146 - 102255 88 19 -27.4 5' arm      3' arm
6129 - 26133 87 25 -30.5 5' arm      3' arm
6111 + 25641 90 19.5 -24.8 5' arm      3' arm
6106 + 5217 89 19.5 -25.06 5' arm      3' arm
6149 - 119369 89 22.5 -23.7 5' arm      3' arm
6102 + 1649 82 22.5 -24.3 5' arm      3' arm
6101 + 550 89 20.5 -37.5 mghv-mir-M1-2       3' arm
6104 + 3454 89 20 -19.7 5' arm      3' arm
6123 - 2091 90 21 -25.1 NP_044841 5' arm      3' arm
6103 + 2374 86 20 -24.5 NP_044841 5' arm      3' arm
6107 + 6325 85 22.5 -21.4 NP_044843 5' arm      3' arm
6108 + 8524 90 22.5 -26.5 NP_044844 5' arm      3' arm
6124 - 10925 87 20 -20.8 NP_044845 5' arm      3' arm
6110 + 13767 89 19 -25.9 NP_044846 5' arm      3' arm
6109 + 13171 83 20 -25 NP_044846 5' arm      3' arm
6125 - 19359 90 20.5 -26.8 NP_044849 5' arm      3' arm
6126 - 21764 75 20.5 -22.8 NP_044849 5' arm      3' arm
6127 - 23739 88 20.5 -21.3 NP_044851 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.