miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629553 NC_001826.1 Murid herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6122 + 107597 86 24 -21.7 NP_044915 5' arm      3' arm
6112 + 28931 88 20 -22.2 NP_044855 5' arm      3' arm
6113 + 29030 90 20 -22.4 NP_044855 5' arm      3' arm
6116 + 32453 89 20 -24.5 NP_044858 5' arm      3' arm
6115 + 31959 83 19.5 -25.5 NP_044857 5' arm      3' arm
6117 + 50200 87 24 -20.7 NP_044870 5' arm      3' arm
6118 + 74301 86 20.5 -20.5 NP_044893 5' arm      3' arm
6119 + 78962 90 21.5 -22 NP_044897 5' arm      3' arm
6120 + 82107 77 19.5 -19.4 NP_044899 5' arm      3' arm
6114 + 29902 89 21 -21.8 NP_044856 5' arm      3' arm
6111 + 25641 90 19.5 -24.8 5' arm      3' arm
6110 + 13767 89 19 -25.9 NP_044846 5' arm      3' arm
6102 + 1649 82 22.5 -24.3 5' arm      3' arm
6101 + 550 89 20.5 -37.5 mghv-mir-M1-2       3' arm
6103 + 2374 86 20 -24.5 NP_044841 5' arm      3' arm
6104 + 3454 89 20 -19.7 5' arm      3' arm
6107 + 6325 85 22.5 -21.4 NP_044843 5' arm      3' arm
6108 + 8524 90 22.5 -26.5 NP_044844 5' arm      3' arm
6106 + 5217 89 19.5 -25.06 5' arm      3' arm
6109 + 13171 83 20 -25 NP_044846 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.