miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12610	-	25448	90	19	-20.5	NP_542538		5' arm      3' arm
12632	-	45737	89	19	-19.8	NP_542569		5' arm      3' arm
12518	+	12627	87	19	-21.2	NP_542517		5' arm      3' arm
12642	-	52199	87	19	-21.8	NP_542576		5' arm      3' arm
12636	-	48628	88	19	-25.6	NP_542571		5' arm      3' arm
12539	+	29037	83	19	-21.6	NP_542546		5' arm      3' arm
12568	+	62501	88	19	-26.9	NP_542589		5' arm      3' arm
12667	-	64416	86	19	-25.2	NP_542591		5' arm      3' arm
12520	+	14427	88	19	-26.5			5' arm      3' arm
12679	-	72378	88	19	-22.7	NP_542601		5' arm      3' arm
12678	-	71295	88	19	-24.6	NP_542600		5' arm      3' arm
12574	+	68768	90	19	-20	NP_542595		5' arm      3' arm
12508	+	1269	87	19	-32.5			5' arm      3' arm
12509	+	3427	86	19	-24.1	NP_542497		5' arm      3' arm
12510	+	4581	85	19	-22.3	NP_542501		5' arm      3' arm
12532	+	22892	88	19	-19.6	NP_542536		5' arm      3' arm
12564	+	49030	90	19	-22.5	NP_542572		5' arm      3' arm
12627	-	38787	88	19	-21.3	NP_542563		5' arm      3' arm
12511	+	4942	90	19	-20.8			5' arm      3' arm
12525	+	16717	86	19	-25.2	NP_542527		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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